PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008244875.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 870aa    MW: 95853.1 Da    PI: 7.3264
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008244875.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.98e-18326425198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e++
  XP_008244875.1 326 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 418
                     89**************************555567778***************9989999999***9.********************876.7777 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     l +++++
  XP_008244875.1 419 LIMGFRK 425
                     7777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-29318429IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-19323425IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-21324425No hitNo description
PROSITE profilePS5086311.138326427IPR003340B3 DNA binding domain
SMARTSM010191.8E-19326427IPR003340B3 DNA binding domain
PfamPF023622.3E-15326425IPR003340B3 DNA binding domain
PROSITE profilePS5105014.286555605IPR011124Zinc finger, CW-type
PfamPF074961.3E-12560602IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MEPRTCTNAA CGTSSSIEWK KGWALRSGGF ANLCLKCWSA YEQSIFCDIF HSKESGWREC  60
ILCGKRLHCG CIASMFLLDL LDGGGVKCIK CAKSSEPQPI LSDEKPDGLG ISKISELQPT  120
AQDNQLDGTN VENLKLIQLG NNKDCNGFRN LLQLQNNDAN GLLQKMKHND TPPPVGEIGG  180
TCLSNFNLAS NGSSEAPKAE VFKANLGIND IYDSLPRTNL SMSLGAPLGK ANPVPAAMFD  240
EREHSKTSSP LLPGARSRNL FPKPPKLALG AGLEENSTIA SHARVARPPA EGRGRNQLLP  300
RYWPRITDQE LQQISGDSNS TIVPLFEKML SASDAGRIGR LVLPKACAEA YFPPISQPEG  360
LPLRIQDVKG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLI  420
MGFRKASNSV AMQSLKGSMD PHLNALSKHL TTASGDISWH KSEKQEGRTR EGMLLPSLLV  480
PERKRTRNIG SKSKRLLIDS QDALELKLTW EEAQDLLRPP PAAKPSTIMI EDLEFEEYEE  540
PPVFGKRSIF IVRSTGEHEQ WAQCDSCSKW RRLPVDVLLP SKWTCADNAW DQSRRSCSAP  600
DELAPRELES FLRMSKEFKK RRTVADNRPT QEHESSGLDA LANAAILGDN AADPGTASVA  660
TTTKHPRHRP GCSCIVCIQP PSGKGKHKPN CTCNVCNTVK RRFKTLMINK KKRQSEREAE  720
IAYRNQHAWG PRDEAEVDST SRHVSSHVDP SDNEARSANE SDSKSQSKVA ETGKGILDLN  780
CHPGREGELQ AGPNHVSMMS LVQVASLPLE TYLKHNGLTS LMSEQQATSS TSHVPPQATN  840
ESEDQHNENQ CQEQESGGEG RPDQGQDDPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1432542913120DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008244875.10.0PREDICTED: B3 domain-containing transcription repressor VAL2 isoform X3
SwissprotQ5CCK40.0VAL2_ARATH; B3 domain-containing transcription repressor VAL2
TrEMBLM5W8A70.0M5W8A7_PRUPE; Uncharacterized protein
STRINGPOPTR_0016s14350.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1